Enrichment of Genes and Diseasesο
Examples:ο
from pyhpo import Ontology, HPOSet
from pyhpo.stats import EnrichmentModel
# initilize the Ontology
_ = Ontology()
ci = HPOSet.from_queries([
'HP:0002943',
'HP:0008458',
'HP:0100884',
'HP:0002944',
'HP:0002751'
])
gene_model = EnrichmentModel('gene')
genes = gene_model.enrichment(method='hypergeom', hposet=ci)
print(genes[0]['item'])
#> PAPSS2
(This script is complete, it should run βas isβ)
For a more detailed description of how to use PyHPO, visit the PyHPO Documentation.